Fastest method in mashtree to create a tree from fastq and/or fasta files using multiple threads, piping into a newick file

mashtree

  • Makes a fast tree from genomes.
    Does not make a phylogeny.
    More information: <https://github.com/lskatz/mashtree>.
  • Trick copyright: tl;dr; <https://github.com/tldr-pages/tldr>

mashtree --numcpus {{12}} {{*.fastq.gz}} {{*.fasta}} > {{mashtree.dnd}}

click the source code to copy