Fastest method in mashtree to create a tree from fastq and/or fasta files using multiple threads, piping into a newick file
mashtree
mashtree --numcpus {{12}} {{*.fastq.gz}} {{*.fasta}} > {{mashtree.dnd}}
mashtree
mashtree --numcpus {{12}} {{*.fastq.gz}} {{*.fasta}} > {{mashtree.dnd}}